Mohammed Naibi, Suleiman Shafiu Ango, Chikwendu Lilian, Jimoh Mustapha Titilope, Muazu Jamilu, Yasmin Abdullahi, Baba Mudassir Abubakar, Muhammad Abubakar Mai Yadi, Bashaku Yakubu Dabban
SAR J Pathol Microbiol | Pages : 276-281
DOI : https://doi.org/10.36346/sarjpm.2026.v07i06.001
The increasing prevalence of multidrug-resistant bacteria such as Escherichia coli and Salmonella spp. has heightened the search for novel antimicrobial alternatives. This study explored the phytochemical constituents and antibacterial activity of Nelsonia canescens, a plant widely used in traditional medicine. Fresh leaves and flowers were obtained from Tudun Wada Market in Gusau, Zamfara State, Nigeria, and extracted using ethanol and water. Bacterial isolates, collected from the Microbiology Laboratory at Federal University Gusau, were characterized through colonial morphology and verified using standard biochemical techniques. Phytochemical screening identified the presence of alkaloids, saponins, flavonoids, tannins, phenols, and glycosides in both aqueous and ethanolic extracts, while quinones were found only in the ethanolic flower extract. Antibacterial activity was evaluated through agar well diffusion, minimum inhibitory concentration (MIC), and minimum bactericidal concentration (MBC) assays. Ethanol extracts consistently exhibited stronger antibacterial effects compared to aqueous extracts. The maximum inhibition zone (22 mm) was observed against Escherichia coli at 200 mg/ml with ethanol leaf and flower extracts, whereas aqueous extracts produced slightly lower activity (20 mm). A statistically significant result (p = 0.0003) validated the potency of the extracts.
SAR J Pathol Microbiol | Pages : 268-275
DOI : https://doi.org/10.36346/sarjpm.2026.v07i05.003
Background: Escherichia coli is the leading causative agent of urinary tract infections worldwide and represents a major public health concern due to its increasing resistance to commonly used antimicrobial agents. Rapid molecular identification, together with the characterization of antimicrobial resistance profiles, is essential for effective patient management and infection control. Objective: This study aimed to molecularly identify E. coli isolates obtained from urine cultures at Shamiya State Hospital, Iraq, and to determine their antimicrobial resistance patterns to support appropriate therapeutic strategies. Methods: Urine samples were collected from patients attending Shamiya State Hospital, Iraq, and processed using standard microbiological procedures. Bacterial isolates presumptively identified as Escherichia coli were obtained through culture on selective and differential media and confirmed by conventional biochemical tests. Molecular identification was performed by polymerase chain reaction (PCR) targeting species-specific genetic markers. Antimicrobial susceptibility testing was carried out using the disk diffusion method in accordance with Clinical and Laboratory Standards Institute (CLSI) guidelines. Results: The isolates comprised 29% E. coli, 21% Staphylococcus aureus, 18% Klebsiella pneumoniae, 12% Proteus mirabilis, 16% Enterococcus faecalis, and 4% Pseudomonas aeruginosa. Among the resistance genes, the CTX-M gene exhibited the strongest resistance profile, while the TET-A and TEM genes showed weaker resistance. The QNR-B gene demonstrated the weakest resistance compared to the CTX-M gene among all isolates. In addition, the demographic characteristics of the individuals from whom the E. coli strains were isolated were recorded. The results obtained contributed to the development of clinical strategies for the prevention and management of uropathogenic E. coli (UPEC) infections in the Shamiya region.
SAR J Pathol Microbiol | Pages : 260-267
DOI : https://doi.org/10.36346/sarjpm.2026.v07i05.002
Diseases caused by waterborne and foodborne pathogenic bacteria present a significant threat to global health and economic stability. Although traditional culture-based methods have long been used, they suffer from time-consuming procedures, underestimation of viable counts, and the inability to detect viable but non-culturable (VBNC) cells. Therefore, this research provides a comprehensive applied study of advanced molecular techniques as precise and rapid diagnostic tools. The study highlights the effectiveness of Polymerase Chain Reaction (PCR) variants and Gene Sequencing techniques in detecting and characterizing enteric and non-enteric pathogenic bacteria (such as E. coli O157:H7, Campylobacter, Salmonella, Shigella, and Legionella) in wastewater environments and wastewater-based epidemiology (WBE). The findings show that molecular methods offer high sensitivity and specificity, effectively overcoming matrix inhibitors and serving as a crucial foundation for early warning and outbreak control.
SAR J Pathol Microbiol | Pages : 252-259
DOI : https://doi.org/10.36346/sarjpm.2026.v07i05.001
The human oral cavity harbours diverse commensal and opportunistic bacteria that can act as reservoirs of antibiotic resistance. This study characterized the occurrence and antibiotic susceptibility of bacteria from 198 oral swab samples from consenting adults, using standard culture, Gram staining, biochemical identification, and Kirby-Bauer disc diffusion testing against ten antibiotics matched to each isolate's Gram reaction. Staphylococcus aureus was the most frequent isolate (42, 21.2%), followed by Escherichia coli (34, 17.2%), Streptococcus salivarius (23, 11.6%), Streptococcus mitis (15, 7.6%), Staphylococcus epidermidis and Neisseria oralis (13 each, 6.6%), and Neisseria mucosa and Klebsiella pneumoniae (11 each, 5.6%); 14.6% of samples showed no growth and 3.5% were undefined. Females yielded more isolates than males, but this was not statistically significant (χ² = 3.04, df = 9, p = 0.963). Resistance to amoxicillin and ampiclox (Gram-positive isolates) and to amoxicillin and sparfloxacin (Gram-negative isolates) was consistently high (13.0-81.8%), with K. pneumoniae showing the highest resistance (81.8% to amoxicillin). Chi-square testing showed organism identity significantly associated with resistance status in both the Gram-positive (χ² = 23.33, df = 3, p < 0.001) and Gram-negative groups (χ² = 42.67, df = 3, p < 0.001), driven mainly by the low resistance of both Neisseria species. Levofloxacin and ciprofloxacin (Gram-positive panel) and gentamycin and ofloxacin (Gram-negative panel) retained the greatest activity. These findings indicate that the oral cavity of healthy individuals harbours bacteria with considerable, organism-dependent resistance to commonly prescribed antibiotics, especially β-lactams, underscoring the need for antimicrobial stewardship and continued community-level resistance surveillance.
SAR J Pathol Microbiol | Pages : 247-251
DOI : https://doi.org/10.36346/sarjpm.2026.v07i04.008
Objective: The development of bacterial pathogens that are resistant to many drugs poses a major threat to global health care. Some of the bacteria are Pseudomonas aeruginosa that are considered very difficult opportunist because of their drug-resistance nature and ability to form biofilms. With this situation, the identification of new antimicrobial compounds from natural sources takes an important role. Therefore, in this study, the purpose was to find out the effect of Camellia sinensis extract on Pseudomonas aeruginosa bacteria. Methods of Work: The study used ten isolates obtained from patients with different diseases. These included the tests for antibacterial activity using the agar well diffusion test, MIC test, and MBC test. Various concentrations of green tea extract were used, namely 25, 50, 75, and 100 mg/mL. Ciprofloxacin acted as positive control while distilled water was the negative control. Results: The inhibition zone was between 8 to 17 mm. The highest inhibition zone was recorded for ciprofloxacin (22 mm). MIC ranged from 0.8–2 mg/mL, whereas MBC was within the range of 2–4 mg/mL. Statistical significance through one-way ANOVA analysis indicated extremely significant differences among the treatments (p < 0.001). Antibacterial activity can be explained by the presence of catechins and polyphenols found in green tea. This means that green tea extract could be a promising alternative for fighting bacteria that have developed resistance.
SAR J Pathol Microbiol | Pages : 241-246
DOI : https://doi.org/10.36346/sarjpm.2026.v07i04.007
Objective: In the present study, the biological activity of the hexane extract of the honey bee Apis mellifera was evaluated against different pathogenic bacteria, as an alternative to synthetic antibiotics to prevent side effects and bacterial resistance. Methods of Work: Bacterial samples were collected from medical laboratories and outpatient clinics in the city of Tikrit; eight isolates of pathogenic bacteria previously identified using the VITEK system were collected, comprising K. pneumoniae, P.auroginosa, P.fluorescence, Staph. haemolyticus , E. aerogense , S. aureus , P. vulgaris , E. coli . Samples of the honeybee Apis mellifera were collected from the Tarmiyah area, north of Baghdad Governorate, using standard insect collection methods. Extracts were prepared at four concentrations (25, 50, 100, and 200 mg/mL) using hexane as the solvent. The tests were conducted using the agar well diffusion method. Results: The results showed that the 200 mg/ml concentration exhibited the highest inhibitory efficacy, with a mean inhibition zone diameter of 17.1 mm, significantly outperforming the other concentrations, while the lowest concentration (25 mg/ml) showed the least efficacy, with a mean inhibition zone diameter of 9.7 mm. The Gram-positive bacterium S. haemolyticus demonstrated the highest sensitivity, with an inhibition zone diameter of 18.0 mm. In contrast, E. coli (Gram-negative) exhibited the weakest response, with an inhibition zone diameter of 8.25 mm. The inhibitory activity of the extract against the studied bacterial isolates, including multidrug-resistant (MDR) strains, is attributed to the specific biochemical composition of the honeybee extract. The superior performance of the hexane extract is attributed to its high capacity for extracting non-polar, hydrophobic organic compounds such as free fatty acids, their esters, and lipophilic substances, which possess a strong ability to penetrate the lipid layers of microbial cell membranes; this highlights the importance of solvent selection in determining the extract's biological activity.
SAR J Pathol Microbiol | Pages : 235-240
DOI : https://doi.org/10.36346/sarjpm.2026.v07i04.006
The increasing deposition of scrap metals in urban environments has contributed significantly to microbial corrosion and heavy metal contamination of soils, posing ecological and public health risks. The study aimed to determine the total mesophilic count, isolate and identify bacterial species present in the contaminated soils, quantify the concentration of selected heavy metals (Zinc, Cadmium, Copper, Lead, and Chromium), and assess the correlation between bacterial occurrence and heavy metal contamination levels. Soil samples were collected from three designated points (A, B, and C) across the dump site and the mesophilic bacterial count bacterial isolates were obtained using serial dilution and spread plate techniques on nutrient agar, followed by morphological and biochemical characterization. Heavy metal concentrations were determined through atomic absorption spectrophotometry after acid digestion of soil samples. The highest Mesophilic bacterial count (5.5x106) was observed in samples from the most heavily polluted areas (B4) while the least (1.2x107) was obtained from A2. The results revealed significant microbial diversity, with fifteen bacterial species identified, including Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis, Klebsiella pneumoniae, and Micrococcus luteus. These isolates displayed varied biochemical characteristics. Heavy metal analysis showed that Sample C had the highest concentrations of all tested metals particularly Zinc (0.34±0.04 ml/kg), Cadmium (0.20±0.05 ml/kg), and Lead (0.34±0.03 ml/kg) while Sample A recorded the lowest levels. It is concluded that the microbial diversity and heavy metal concentration in soil from a scrap metal revealed both high contamination level and the present of metal tolerant bacteria.
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